F., Martyniuk, C. J. and Houlahan, J. E. (2017). Optimal alpha reduces error

s in gene expression studies: a meta-analysis approach, BMC Bioinformatics,

pp. 312.

Elahi, H., Ayub, A., Frezza, F. and Rizzi, A. (2019). Cancer diagnosis using

p learning: a bibliographic review, Cancers, 11, pp. 1235.

W., Sutton, G. G., Delcher, A. L., et al., (2000). A whole-genome assembly of

osophila, Science. 287, pp. 2196–2204.

, S. B. and Wunsch, C. D. (1970). A general method applicable to the search

similarities in the amino acid sequence of two proteins, Journal of Molecular

logy, 48, pp. 443–453.

C. G. A. R. (2011). Integrated genomic analyses of ovarian carcinoma. Nature,

, pp. 609–615.

T., Watanabe, M., Suzuki, H., Toyota, M., Sekita, N., Hirokawa, Y., Mizokami,

Ito, H., Yatani, R. and Shiraishi, T. (2000). Epigenetic regulation of androgen

eptor gene expression in human prostate cancers, Laboratory Investigation, 80,

1789–1796.

, Gauo, X and Pan, Y. (2016). Multiple Biological Sequence Alignment: Scoring

nctions, Algorithms and Applications, (John Wiley & Sons).

T., Le, N. Q., Ho, Q. T., Phan, D. V. and Ou, Y. Y. (2019). Using word

bedding technique to efficiently represent protein sequences for identifying

strate specificities of transporters, Analytical Biochemistry, 577, pp. 73–81.

M., Workman, A. M., Sjeklocha, D., Brodersen, B., Grotelueschen, D. M. and

ersen, J. L. (2020). Upregulation of the type I interferon pathway in feedlot

le persistently infected with bovine viral diarrhea virus, Virus Research, 278,

197862.

and Wright, S. J. (1999). Numerical Optimisation, (Springer-Verlag).

E., Ulyantsev, V., Koepfli, K. P., O'Brien, S. J. and Dobrynin, P. (2020).

DMA: genetic algorithm for inferring demographic history of multiple

ulations from allele frequency spectrum data, Gigascience, 9, pp. giaa005.

R. (2015). Advancements and challenges in computational biology, PLoS

mputational Biology, 11, pp. e1004053.

d Spiegelman, C. H. (1987). A semiparametric approach to density estimation,

rnal of the American Statistical Association, 82, pp. 858–865.

, O'Neill, M. J. and Graves, J. A. (1998). Dermethylation associated with

oelement activation and chromosome remodelling in an interspecific

mmalian hybrid. Nature. 393, pp. 68–72.

Tay, E., Dwyer, D. E., George, J. and Douglas, M. W. (2019). Pre-treatment

viral resistance in Australians with chronic hepatitis C: prevalence of NS3 and

5A resistance data in the state of New South Wales, Antiviral Therapy, 24, pp.

–290.

H. and Cochrane, D. (1949). A sampling study of the merits of autoregressive

reduced form transformation in regression analysis, Journal of American

tistics Association, 44, pp. 356–372.